Scaffold Ga0302118_10098706

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0302118_10098706

Scaffold Ga0302118_10098706

Overview

Basic Information
Taxon OID	3300031627 Open in IMG/M
Scaffold ID	Ga0302118_10098706 Open in IMG/M
Source Dataset Name	Marine microbial communities from Western Arctic Ocean, Canada - AG5_33.1
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1457
Total Scaffold Genes	5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	4 (80.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location Name	Canada: Western Arctic Ocean
Coordinates	Lat. (^o)	70.5467	Long. (^o)	-122.9077	Alt. (m)		Depth (m)	74
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F070003	Metagenome	123	Y
F078584	Metagenome	116	Y
F090993	Metagenome	108	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0302118_100987062	F078584	AGGA	VKVGDLVIATEDAYTFDKGDIGLLTHIDRGPPDKEYRPLYFVQWNNRLSRGPMDVQEALIETLYSR
Ga0302118_100987064	F070003	GAGG	VKVGDLVKFRRHNNSPHGIVLKIVDLPESPHPSQPERGAAYIEWACKYTAAGNYQLSILEVVDESR
Ga0302118_100987065	F090993	N/A	RLKRTIVHRSKESSMKVGDLVQVLPAKIGYYIILGKTDDPDDYVGRTVYWELYPLPSANFHYAGPMNERYIEVVSEGR

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