NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302118_10059220

Scaffold Ga0302118_10059220


Overview

Basic Information
Taxon OID3300031627 Open in IMG/M
Scaffold IDGa0302118_10059220 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - AG5_33.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1942
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)70.5467Long. (o)-122.9077Alt. (m)Depth (m)74
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035802Metagenome171Y
F099448Metagenome / Metatranscriptome103N

Sequences

Protein IDFamilyRBSSequence
Ga0302118_100592202F035802AGGAMVDITSNILKDIFGKRLNKAKEGIAKSLKTKSLKAIEDYKNSFKFELPSSETPTTTPETPKADT
Ga0302118_100592203F099448GGAGGMKTSKPYKTMKSILKVKTQSFIDVYKKNLFKDILEKPELDVVNESDTQVKQWIKDKSLTDDLLVDAIKNVMKERIKNG

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