NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302118_10042049

Scaffold Ga0302118_10042049


Overview

Basic Information
Taxon OID3300031627 Open in IMG/M
Scaffold IDGa0302118_10042049 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - AG5_33.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2338
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → Viruses → unclassified viruses → Circular genetic element sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)70.5467Long. (o)-122.9077Alt. (m)Depth (m)74
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001611Metagenome / Metatranscriptome663N
F002374Metagenome / Metatranscriptome566Y
F024207Metagenome / Metatranscriptome207Y

Sequences

Protein IDFamilyRBSSequence
Ga0302118_100420491F024207N/AGVGSIGASIMGTGSRERPVLTQSRRNKSKVRQLVNFMGIEGTADFLSQSGGRSVSPNDVVALLLRTFRNDGAYITKAQVRNLRRTTNRFKSLEKQVKEATSMSRTTRRAPVRRSASSTTLIRN
Ga0302118_100420492F001611AGGAMPLVQKTLTLAAGATSDNILANTNYEFVDGNVRLRIASAVDTAGTTETVDTFLNVSVNNAEFSKDVSVPALNAGQPFGVLNGSYVNNDLITTGAQRNRILVRFTNDTAGTRTIRCGIFIG
Ga0302118_100420494F002374N/AMISNSNMDHFLLYTSIILASVTFFLCLYACARVGKVLNSVKGLDWDTIACLTGDIGTIKKSIQTLNNRINGLNSPKLNDELLQYVEKQRSNVTNINKTSIGG
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