| Basic Information | |
|---|---|
| Taxon OID | 3300031627 Open in IMG/M |
| Scaffold ID | Ga0302118_10039630 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Western Arctic Ocean, Canada - AG5_33.1 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 2413 |
| Total Scaffold Genes | 5 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → unclassified viruses → Virus sp. | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Canada: Western Arctic Ocean | |||||||
| Coordinates | Lat. (o) | 70.5467 | Long. (o) | -122.9077 | Alt. (m) | Depth (m) | 74 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000613 | Metagenome / Metatranscriptome | 985 | Y |
| F003678 | Metagenome / Metatranscriptome | 474 | Y |
| F008886 | Metagenome / Metatranscriptome | 326 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0302118_100396301 | F008886 | N/A | EPFGWNGNYVMNDMVTQGAVRNRPVITFTNGTAATRTVDVAIFIGG |
| Ga0302118_100396303 | F003678 | N/A | MDQFLLYGSFFCAILSLFLCFYACARVGSFISASKGLDWDAIANITGDLGTIKKTIQTLNNRLNGMNSPKLADQELMLQLLQKQPKQAVNGTMSNVGG |
| Ga0302118_100396305 | F000613 | AGGA | MPLVKKRLSIAAGATSDQVLAGTTYEYVDPGTRIVVAAAVDTVGSATADTTLNFNVNNAEFARAASVSAIVTGEPFGWNGNYVMNDMVTQGAVRNRPVITFTNGTAATRT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |