NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302118_10019669

Scaffold Ga0302118_10019669


Overview

Basic Information
Taxon OID3300031627 Open in IMG/M
Scaffold IDGa0302118_10019669 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - AG5_33.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3462
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Oligoflexia → Bacteriovoracales → Halobacteriovoraceae → unclassified Halobacteriovoraceae → Halobacteriovoraceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)70.5467Long. (o)-122.9077Alt. (m)Depth (m)74
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F059124Metagenome134Y
F072426Metagenome121Y
F073751Metagenome120Y

Sequences

Protein IDFamilyRBSSequence
Ga0302118_100196692F072426N/AMNTKPNLVDPNWFAKPKPKVKQVIPVNTNNSLIINIIGLCILMIGCLCIYQRYMDRDKSELENHNRIIELSEYVKRNIK
Ga0302118_100196693F059124N/AMFDLDSNLVMAILLYLGSCYILYSYKHEKMFDESGNFKCFGLQKGETVFPYWLVTALIGLTSYYLLTINNDRV
Ga0302118_100196696F073751N/AMDHIDYCINWKITPKKCFEIIHLSLIDILEGKENKTMPLNDLIRTLNSRTKVYKLHDQKKYNSFSKYMKVEYDGFLNFIDSYNFYDIIYNDKDISIKLYKNLVDLNDIQYSGKRLTKDSEWILL
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