NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302118_10014396

Scaffold Ga0302118_10014396


Overview

Basic Information
Taxon OID3300031627 Open in IMG/M
Scaffold IDGa0302118_10014396 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - AG5_33.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4039
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (21.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)70.5467Long. (o)-122.9077Alt. (m)Depth (m)74
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001217Metagenome / Metatranscriptome745Y
F052198Metagenome143Y
F065127Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0302118_1001439610F001217N/AMSRTKFNGFEKYFITTALNHAIEEAEENIKELVREGKRPIYAEGYFKMVGKELIAKVNDMTLKRDQ
Ga0302118_1001439612F065127N/AMSAIHYLASVKAFAKIEMLGFQIRRDAVDLECGYYGGDISREQFVLVAEGNKTELKVWQYIAELIEKSNKIQQ
Ga0302118_1001439613F052198N/AMKQELQNKVNELKLTLGSLELNAKTVKDDLTEATKKLEDASKPIITKYLLEEIQYVIEQSIRNSSLSSVDSYDVDFEIDYNNSLALGSIEFNDADQLSEEIADGIENIFNIIEN
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