NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302121_10192960

Scaffold Ga0302121_10192960


Overview

Basic Information
Taxon OID3300031626 Open in IMG/M
Scaffold IDGa0302121_10192960 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB21_surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)578
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)74.0136Long. (o)-139.5971Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F086186Metagenome111N
F087770Metagenome110N

Sequences

Protein IDFamilyRBSSequence
Ga0302121_101929601F086186N/ANLEHLTPLSEERQRLMNAVEESQWEGDMHRADLLSTELYLVNQCITKGELYAPLF
Ga0302121_101929602F087770GGAMPPKQEELKSTHTIRKACDFYMRTPKFSALGGKSQYDYERNLEFACVTPVQGGKFLGNIKLKDLQFSNVTVGYDYWQVKHGVRAANYIATCLSIVLNTARRHEVLLSNPVS

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