NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0315545_1121140

Scaffold Ga0315545_1121140


Overview

Basic Information
Taxon OID3300031624 Open in IMG/M
Scaffold IDGa0315545_1121140 Open in IMG/M
Source Dataset NameSalt marsh sediment microbial communities from the Plum Island Ecosystem LTER, Massachusetts, United States - Salt Marsh Sediment SW1602-10
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1132
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → environmental samples → uncultured Mediterranean phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Intertidal Zone → Salt Marsh → Salt Marsh Sediment → Salt Marsh Sediment Microbial Communities From The Plum Island Ecosystem Lter, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.722Long. (o)-70.847Alt. (m)Depth (m).1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F072364Metagenome / Metatranscriptome121N
F083739Metagenome112Y

Sequences

Protein IDFamilyRBSSequence
Ga0315545_11211402F072364GGAGGMPDLFEAVGFADGISGNSIKMFLDGVPVLALQNFNWKIKKGKKPLFGAGFKSAHGVTCSAHKIYEIDFEIKEILTNSAINAVETAKNAALLSTFEDFTDIRNAVIIIMYPGVAAVRSKTFTGVEITDQEGGFSDSEDAEPIGIKCSGFATNATGIF
Ga0315545_11211403F083739AGGAMSETQNSTITEKIIAELKEKYKGYPLFQITDNATGEVFIIRGSNWDEFAQIGNVKPGKENRVPLNMVKAYVVYPEIDQQDIEYNRSGNWQPGRIVALAEQIQEALGYNKEFTVKKL
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