NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302114_10413497

Scaffold Ga0302114_10413497


Overview

Basic Information
Taxon OID3300031621 Open in IMG/M
Scaffold IDGa0302114_10413497 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - AG5_Surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)501
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)70.5467Long. (o)-122.9077Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F077813Metagenome117Y
F094096Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0302114_104134971F094096N/AQPIEYDMPEDAEPFDKTIAYGDVYLGYPHVGKSPEVCMLQNDNSNLNQTCRIHNKIVCNILISLVNLTCKSDDELLEWYDNNKITMFTKEEMLKYNGWAKIGEVINKEQIDKVDRNNLKIQYVTN
Ga0302114_104134972F077813N/AMSQISKKKFWNILKRIPTKGWNSRIPDKDTPQSVWIAGYKRWRKL

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