NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302114_10014140

Scaffold Ga0302114_10014140


Overview

Basic Information
Taxon OID3300031621 Open in IMG/M
Scaffold IDGa0302114_10014140 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - AG5_Surface
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4412
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)70.5467Long. (o)-122.9077Alt. (m)Depth (m)5
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012942Metagenome275Y
F028393Metagenome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0302114_100141402F028393N/AMTTPDFFSKRTPFYMNPNPKERNFLQEVLNVNWYILGLSLFVVIFVGCVLGWHSSLSMSRIGSDGIPVSEERNVTLILMLVGYIFGHAIFRETGRMKGVQCGAITWSYEIGKRCVLSVSWPAYMKAAILVMGPVMVLAYLPGITIVTFYNLELPAMVVYFIFALSMMMKPTNDFLLKEGAINNAKADALTRRNSVRRASQAALTIVHEPTTTHQTKKYNGVKQLFALMSNLLIFLAYPFTVLTLFRSFGVGGRMAIVLLFHPLIMEFLMHGYRASTGVGMNWIGEEVKIDPMRDLMGVFIMESYLVLVRRIMLCNLGSFQATTIAIIVTGIEETAIRSTIEVSERAKQTKI
Ga0302114_100141407F012942GAGVSLCTVEGLFAPGAHQTPESVADATFSLFRLQHSLHIDQLSLVVLHVLDERASGVVGAVNLLVDELLGEVFSEEGGEWGGGDVLGGEAEHLNNLTARIVMGVLSKLESRLVIGVGSNKGKWVPMDHSKSKKHEGVAVYLAVAGNRSKKMRMVVFEHFTHQLVIVLIDPLVTVSPRS
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