NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307508_10163866

Scaffold Ga0307508_10163866


Overview

Basic Information
Taxon OID3300031616 Open in IMG/M
Scaffold IDGa0307508_10163866 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1826
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.0822Long. (o)-123.061Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F087977Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0307508_101638661F087977GAGMSMRMAVRRMPAARRMVQVRRGVKIDELHEIVSAALTVTDSGKWYNTT
Ga0307508_101638662F087977GAGMSMRMAVTRMPAARRMVQVRRGEKIDELREIVSAALTVTDSGKLYNTT
Ga0307508_101638663F087977N/AMTSTMSIRMAVRRMPAAWRMVQVRRGEKIDELREIISAALTVTDIGKLYNTT
Ga0307508_101638664F087977GAGMSMRMAVRRMPAARRMVQVRHGEKIDELREIVSAALTVTDSGKLYNTT
Ga0307508_101638665F087977AGGAGMSMRMAVRRMLAARTMVQVRRGEKIDELREIVSTALTVTDSAKLYNTT
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