NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307508_10098908

Scaffold Ga0307508_10098908


Overview

Basic Information
Taxon OID3300031616 Open in IMG/M
Scaffold IDGa0307508_10098908 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2510
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (28.57%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.0822Long. (o)-123.061Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029299Metagenome188Y

Sequences

Protein IDFamilyRBSSequence
Ga0307508_100989081F029299N/AMANALTLRVQKADAVACVVRMTFALTLCVRKKFALTVSVCKKRAASGWLMP
Ga0307508_100989084F029299N/AMANALTLRVQKADAVAWVVRTTFALTLCIRKKFALTVSVCKKRAASGWQMP
Ga0307508_100989085F029299N/AMANALTLRVQKADAVACVVRTTFALTLCVRKKFALTVSVCKKRAASGWLMP
Ga0307508_100989087F029299AGGAMANTLTLRVQKADAVARVVRTTFALTLCIRKKFALTVSVCKERAASGWQMP
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Institute for Fundamental Biomedical Research
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