NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307508_10052753

Scaffold Ga0307508_10052753


Overview

Basic Information
Taxon OID3300031616 Open in IMG/M
Scaffold IDGa0307508_10052753 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3610
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (50.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.0822Long. (o)-123.061Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029299Metagenome188Y
F087977Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0307508_100527531F087977GAGMRMAVRRMPAARTMVKVRRGEKIDELREIVSAALTVTDIGKLYNTT
Ga0307508_100527532F087977GAGMRMAVRRMPAAMTMVQVRRGEKIDELREIVSAARTVTDSGKLYNTT
Ga0307508_100527533F029299N/AMANALTLRIKKADAVARVVRMTFALTLCVRKKFALTVSICKERAASRWLTP
Ga0307508_100527535F029299AGAAGMANALTLRVQKADAVACVVRTTFGLTLCVRKKFALTVSVCKKRAVSGWLTP
Ga0307508_100527538F029299AGGAMANALTLRVQKADAVACVVRTTFALTLCIWKKFASTVSVCKKRAASGWQMP
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