| Basic Information | |
|---|---|
| Taxon OID | 3300031616 Open in IMG/M |
| Scaffold ID | Ga0307508_10010374 Open in IMG/M |
| Source Dataset Name | Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 8522 |
| Total Scaffold Genes | 24 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (45.83%) |
| Novel Protein Genes | 12 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 6 (50.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Oregon | |||||||
| Coordinates | Lat. (o) | 45.0822 | Long. (o) | -123.061 | Alt. (m) | Depth (m) | Location on Map | |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F029299 | Metagenome | 188 | Y |
| F087977 | Metagenome | 109 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307508_1001037410 | F029299 | N/A | MANALTLLVQKLDAMARVVPTTFALTLCIRKKFALTVSVCKKRAASGSLTP |
| Ga0307508_1001037411 | F029299 | N/A | MANALTLRFQELDAVASVVRTTIVLTLCIRKKFASTVSVCKKRAVSGWQMP |
| Ga0307508_1001037413 | F029299 | N/A | MANALTLRVQKADAVACVVWTTFALTLFVWKKFALTVSVCKKRAASGWLTP |
| Ga0307508_1001037417 | F029299 | N/A | MANALTLRVQKADAVACVVRTTFALTLCVRKKFALTVSVCKKRAASGWLTP |
| Ga0307508_1001037419 | F029299 | N/A | MRCVRMANALTLRVQKADAVACVVRTTFALTLCVRKKFALTISVCKECAASGWQMP |
| Ga0307508_100103742 | F087977 | AGGAG | MRMAVRRMLAARTMVQVRCGEKIDELREIVSAALTVTVSGKLYNTT |
| Ga0307508_1001037422 | F029299 | AGGA | MANALTLRVQKADAVARVVPTTFALTLCVRNKFALTVSVCKKRAASGWQMP |
| Ga0307508_100103743 | F087977 | GAG | MRMAVRRMPAARTMVQVKRGEKIDELREIVSAALTVTDSGKLYNTM |
| Ga0307508_100103744 | F087977 | GAG | MRMAVRRMPAARMMVQVRRGEKIDELREIVSAALTVTDSGKLYNTT |
| Ga0307508_100103745 | F087977 | GAG | MRMAVRRIPAARTMVQVRRGEKIDELREIVSAALIVTDSGKLYNTT |
| Ga0307508_100103746 | F087977 | GAG | MRMAVRRMPAARTMVQVRRGEKIDELREIVSAALTVTDSGKLYNTT |
| Ga0307508_100103748 | F029299 | N/A | MANTLTLRIQKAYARACVVQTTFALTLFVRKKFALTVSVCKKRAASGWQMP |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |