NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307508_10007379

Scaffold Ga0307508_10007379


Overview

Basic Information
Taxon OID3300031616 Open in IMG/M
Scaffold IDGa0307508_10007379 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10244
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (40.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.0822Long. (o)-123.061Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029299Metagenome188Y
F042662Metagenome157Y
F087977Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0307508_1000737911F029299N/AMANALTLRVQKADAVTCVVQTIFALTLCIRKKFALTVTVCKKRAASGWQMP
Ga0307508_1000737913F029299N/AMRCVRMANALTLRVQKADAVARVVRTTFALTLCIRKKFTLTVSVCKERAASRWQMP
Ga0307508_1000737914F029299N/AMANALTLRVQKADAMACVVQKTFALTLCVRKKFALTVSVCKECAASGWQMP
Ga0307508_1000737919F087977GAGMSMRMAVRRMPVARTMVQVRRGEKIDELREIVSAALTVTDSGKLYNTT
Ga0307508_100073792F042662N/AMTCFDDNYFEDHLYLLELSTFLEPKSQYAFDYTFQSIDDEISKYEQWEEFFDGPKPIHEIIDCTPYHWYTQQWWNCALLSQPADFDEVELFDLFDYHFDYDSTIHSGDFLDHY
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