NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307508_10003246

Scaffold Ga0307508_10003246


Overview

Basic Information
Taxon OID3300031616 Open in IMG/M
Scaffold IDGa0307508_10003246 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16616
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (44.83%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (37.50%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.0822Long. (o)-123.061Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029299Metagenome188Y
F087977Metagenome109N

Sequences

Protein IDFamilyRBSSequence
Ga0307508_1000324613F087977AGGAGMRIAVRRMPAARTMVQVRRGEQIDELREIVSTALSVTDSGKLYNTT
Ga0307508_1000324614F087977AGGAGMRMVVRRMLAARTMVQVRRGEKINELHEIVSAALTVTDSGKLYNTT
Ga0307508_1000324616F029299N/AMANTLTLRVQKADAVAYVVRTTFALTLCVRKKFALTVSVCKKCAASGWLTP
Ga0307508_1000324619F029299AGGAMANALTLRVQKADAMACVVRTTFALALCISKKFASTVSVCKKRAVSGW
Ga0307508_1000324621F029299N/AMANTLTLRVQKADAVACVVRMTFALTLCVWKKFALTVSVCKKRAASR
Ga0307508_1000324624F029299N/AMRCVRMANALTLRGQKADTVAHVVPTTFALTLCVLKKFALTVSVCKKRAASGWLTP
Ga0307508_100032468F029299N/AMANALTLHVQKADAVARVVRTIFALTLCIWKKFALTVSVFKKRAASRWLMP
Ga0307508_100032469F029299N/AMANALTLRVQKADAVACVVRTTIALTLCVRKKFALTVSVCKKRAASGWLMP
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