Scaffold Ga0307508

Basic Information
Taxon OID	3300031616 Open in IMG/M
Scaffold ID	Ga0307508_10001863 Open in IMG/M
Source Dataset Name	Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

Scaffold ID

Source Dataset Name

Populus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	23261
Total Scaffold Genes	49 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	22 (44.90%)
Novel Protein Genes	12 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (8.33%)
Associated Families	1

Scaffold Components

Scaffold Length (bps)

23261

Total Scaffold Genes

49 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

22 (44.90%)

Novel Protein Genes

12 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (8.33%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales → Pyronemataceae → Sphaerosporella → Sphaerosporella brunnea	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina → Pezizomycetes → Pezizales → Pyronemataceae → Sphaerosporella → Sphaerosporella brunnea

(Source: UniRef50)

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Ecosystem

Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location Name	USA: Oregon
Coordinates	Lat. (^o)	45.0822	Long. (^o)	-123.061	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Oregon

Coordinates

Lat. (^o)

45.0822

Long. (^o)

-123.061

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F029299	Metagenome	188	Y

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0307508_100018631	F029299	N/A	RMANALTLRVQKADAVARVVRTTFALTLCVRKKFALTVSVCKERAASGWLTP
Ga0307508_1000186312	F029299	AGGA	MANALTLRVQKADAVARVVRTTFALTLCVRKKFALTISVCKKRTASGWLTP
Ga0307508_1000186316	F029299	N/A	MANALTLLVQKLDAVARVIPTTFALTLCVWKKFALTVSVCKKRAVSGWLTS
Ga0307508_1000186317	F029299	N/A	MANVLTLRFQKLDAVASVVCTTIALKLCIRKKFASTVSVCKKRAASGGQMP
Ga0307508_1000186323	F029299	N/A	MANALTLRFQKIDAVASVVWTTIALTLCIRKKFASTVSVCKKRAASGGQMP
Ga0307508_1000186329	F029299	N/A	MANALTLLVQKLDAVARVIPMTFALTLCVRKKFALTVSVCKKRAVSGWVTP
Ga0307508_100018633	F029299	N/A	MANALTLRVLKADAVARVVPTTFAFTLCIRKKFALTVSVCKKRAASGWLTP
Ga0307508_1000186330	F029299	N/A	MGNTLTLRFQKLDTVASVVWTTIPLTLCIRKKFASTVSVCKKRAVSGGQMP
Ga0307508_1000186337	F029299	N/A	MANALTLRVQKADAVARVVPMTFALTLCVRKKFALTVSVCKIRAASRWQMP
Ga0307508_100018634	F029299	N/A	MANALTLRVQKADAVACVVRTTFALTLCVRKKFALTVSVCKKRAASGWQML
Ga0307508_100018635	F029299	N/A	MANALTLLVQKLDAVARVVPTTFALTLCVRKKFALTVTVCKKRAASGWLTP
Ga0307508_100018636	F029299	N/A	MANALTLRFQKLDAVASVVRMTIALTLGIQKKFASTVSVCKKRAVSGGQMP

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0307508_10001863

Overview

Ecosystem & Geography

Associated Families

Sequences