NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307508_10000729

Scaffold Ga0307508_10000729


Overview

Basic Information
Taxon OID3300031616 Open in IMG/M
Scaffold IDGa0307508_10000729 Open in IMG/M
Source Dataset NamePopulus trichocarpa ectomycorrhiza microbial communities from riparian zone in the Pacific Northwest, United States - 9_EM
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)39024
Total Scaffold Genes46 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (36.96%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Eukaryota → Opisthokonta → Fungi → Dikarya → Ascomycota → saccharomyceta → Pezizomycotina(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Roots → Unclassified → Unclassified → Ectomycorrhiza → Soil And Ectomycorrhiza Microbial Communities From Populus Trichocarpa Stands In Riparian Zones In The Pacific Northwest, United States

Source Dataset Sampling Location
Location NameUSA: Oregon
CoordinatesLat. (o)45.0822Long. (o)-123.061Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011056Metagenome295Y
F011721Metagenome287Y
F042662Metagenome157Y

Sequences

Protein IDFamilyRBSSequence
Ga0307508_1000072927F011056N/AMTNFDYTYFEDHLYLLELSTFLEPKSQYSFDYTFQSIDSELADYERWDTSSDGPIPTPYLEGNHEPWNWYMQYWVNCAHSHKNAEFTEDELRHLCDDHFTDHETIYTGDFLDRY
Ga0307508_1000072930F042662N/AMTCFDDTYFEDHLYLLELSTFLEPKSQYSYDYTFQSIDYEISKFKHWEEFFDGSKTNLEKIDCTPYHCYTQQWWKCALLSQPANFDEDELFDLFDYPFDYDSTIHSGDFLDQY
Ga0307508_1000072945F011721N/AMPSFEQDHFLLLDLATILEPQSSYQFDYTFSSIDEEIATTAKEENEWNEYVDGPAPVELDDIMPWYWYTQYWTTCTRLQQSANLNGLEFREICDYEFQDDETIYTGHFLDLY
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