NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0302132_10069127

Scaffold Ga0302132_10069127


Overview

Basic Information
Taxon OID3300031605 Open in IMG/M
Scaffold IDGa0302132_10069127 Open in IMG/M
Source Dataset NameMarine microbial communities from Western Arctic Ocean, Canada - CB9_32.1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1812
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → Euryarchaeota → unclassified Euryarchaeota → Euryarchaeota archaeon(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Unclassified → Marine → Marine Microbial Communities From Western Arctic Ocean, Canada

Source Dataset Sampling Location
Location NameCanada: Western Arctic Ocean
CoordinatesLat. (o)77.9995Long. (o)-150.0065Alt. (m)Depth (m)121
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000302Metagenome / Metatranscriptome1337Y
F019731Metagenome / Metatranscriptome228Y

Sequences

Protein IDFamilyRBSSequence
Ga0302132_100691272F000302AGGAGMAVKTMTQDTKDQIANLERQKIALEDQLEFVGNNLVRMHELEQEIFEIEDTISKITA
Ga0302132_100691274F019731AGGAGMEDLDNILSNIDLEEELKETEDTAKDWYCGDCEHGPMMDNDTHCTRCGIKHNTVQPEEMTGWEDEDIEAEVEEIF

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