NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307989_1010805

Scaffold Ga0307989_1010805


Overview

Basic Information
Taxon OID3300031603 Open in IMG/M
Scaffold IDGa0307989_1010805 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #185
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2668
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013465Metagenome271Y
F014671Metagenome261Y

Sequences

Protein IDFamilyRBSSequence
Ga0307989_10108053F014671AGGAGMSANINGADMPTLTVFRMELQRITDMNLDINPIITEYMKSRIDNLENLERMNNE
Ga0307989_10108057F013465GAGGMIIREYIRSMINEPTPARPMNEQEYRDIYAEYCMESGVRWTDRGFMEFKAWRKRAEELFEKRAESS

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