NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307989_1003456

Scaffold Ga0307989_1003456


Overview

Basic Information
Taxon OID3300031603 Open in IMG/M
Scaffold IDGa0307989_1003456 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #185
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6646
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (63.64%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)45
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008341Metagenome / Metatranscriptome335Y
F015662Metagenome / Metatranscriptome253Y

Sequences

Protein IDFamilyRBSSequence
Ga0307989_10034563F008341AGGMTATLRKIVVETMIPANFNFMARDLDGSVHAFVNEPNLDYGTNKNPLPCDMWDDPSGGDTMPVSFKTSTDAGNLAEELGDWRESCVEITELITGGN
Ga0307989_10034565F015662N/AMGIIKNQFIEKLIEDEKFIKNTIDFVEISSDESARVEEKVDMARLRERNRIQMEMYDDPYMNWSGHR

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