NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307993_1017611

Scaffold Ga0307993_1017611


Overview

Basic Information
Taxon OID3300031602 Open in IMG/M
Scaffold IDGa0307993_1017611 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #260
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1801
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (83.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015794Metagenome252Y
F040867Metagenome / Metatranscriptome161N

Sequences

Protein IDFamilyRBSSequence
Ga0307993_10176113F040867GGAMIENVYGQDVVNQRALYLTLLAKAVINIDGGRARNEDDDLLIAEAMAWVESFSNFIDEEEMTEH
Ga0307993_10176116F015794N/AETKEILQLFSLRGYTLRETANALEMKYSTLKTQAWELNIKFKNGSSTIDRHHKVMFHGREVGIKELADENNMNWKTLSDRLRYGWTAEEAVIQPVRGGNWTHREGTDREPTGTDITSIWLRKKWIL

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