NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307993_1003387

Scaffold Ga0307993_1003387


Overview

Basic Information
Taxon OID3300031602 Open in IMG/M
Scaffold IDGa0307993_1003387 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #260
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4743
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (11.11%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)18
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013325Metagenome / Metatranscriptome272Y
F067751Metagenome / Metatranscriptome125N

Sequences

Protein IDFamilyRBSSequence
Ga0307993_10033877F013325N/AMEKHQNKPDMKKEKDGIVTDQKETVTKNPRKLSEIITDKKAALKLNEDLLRQLQTNEYEIPFGSAKLYKQLCKFLEKDAEWGHTTATGLVMLYSNLRENAKATQTKDWDGIIKLRGTSITILWTMVTSMKGRGFYEARNFIELMAEMGQDLSTVVGKVHTDNQALRDNHVKLSELDTEVNDPNIILDVDIAKYDEAEEELNKLMDEVDPVVETV
Ga0307993_10033879F067751N/AMKHIKDYTMFKESLDVESITEGFSSSILRDLSSQNRGKWGGNLAKDMQKFASLALDKISDSDFTITTPTEYFAGGDKKNPQKVAFFVDDDKGFIKWAKANKKYLPGDLSLGNISKYGVVLSVLRGGVGMWHGFAMDKGSTYSRHRKGAEERYGILAKDYELGSLYNGWESRPVAKVTKKNLIETATRVYVLDLDSLRDKYDVKGLMNDRKDSKAGA
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