| Basic Information | |
|---|---|
| Taxon OID | 3300031602 Open in IMG/M |
| Scaffold ID | Ga0307993_1000020 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Ellis Fjord, Antarctic Ocean - #260 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 44946 |
| Total Scaffold Genes | 37 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (8.11%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Southern Ocean | |||||||
| Coordinates | Lat. (o) | -68.5958 | Long. (o) | 78.1913 | Alt. (m) | Depth (m) | 18 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F004606 | Metagenome / Metatranscriptome | 431 | Y |
| F013783 | Metagenome / Metatranscriptome | 268 | Y |
| F017335 | Metagenome / Metatranscriptome | 241 | Y |
| F018962 | Metagenome / Metatranscriptome | 232 | Y |
| F022460 | Metagenome / Metatranscriptome | 214 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307993_100002014 | F022460 | N/A | MATVKDRRTGYPSLYRATYEEGWVLKNTGFDYTKNLLNNTMSKYMFKNPQIKIFLEDYLTPIMVFYINKVKYVRIFYNFAVPKWYQKIN |
| Ga0307993_100002024 | F017335 | N/A | MNIRSLELKNKLSIEETGEQYYDLSAPSFSYKRELGVKALHYVTVDQAGRVDKISEQYFGTGAYIDAICIVNNIFNPFSVSEGDILAIPQLKNEGLVYARPNAASRPSETLAQYTNTDRQSAPDQSRIQRLAQLAKSKKNGVKSPIPPNMLQQGQEAKTYAGGKILLGANLPTRTKTKK |
| Ga0307993_100002026 | F004606 | N/A | MKTHRIFNKGQTVYCLLASHTNPNILLPVKGIILDSKWDPVNPLYQIRLVKFYDNMKFLKQHFFDMNFRHVFQHRARKMILKADDFKTTSVLEARLNDIDRERFYVVIESVMCTKTKVSLSELFEKVQFYMISKNLKEIRDISTRPFFKGPLSLDSVKEFDAKYKKGWSDKFDKSSLNIDKYLNSLG |
| Ga0307993_100002028 | F018962 | N/A | MVKIILESARNGVIKKVTDDNYGGGKEYFTSTDVYESADELDKNKKSYIKRFFFDLCDDLGLEIGSKFDNNILDITSIWGSHYEPTVKEIESKIKKLKTELIELEEWKKNI |
| Ga0307993_100002034 | F013783 | N/A | LILEGITFKLALDFFLFLKKNRITSTSIKVDFFDRVKHQYIDFADTAAMQVYYNSNYMPLNNCNLGDLVSISFFLASSELYDFTTEFKALDVTNNLKLESGSAYDRQRNSGRQVLIDRQVQLIKNAVAEYSKYYLELKFIYTTGIYSPCYAVPGWSENTWYLKSFREAFTTNRDTSEFPYSDTTIEEFPPN |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |