NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307992_1024477

Scaffold Ga0307992_1024477


Overview

Basic Information
Taxon OID3300031601 Open in IMG/M
Scaffold IDGa0307992_1024477 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #133
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2766
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Tenericutes → Mollicutes → Acholeplasmatales → Acholeplasmataceae → unclassified Acholeplasmataceae → Acholeplasmataceae bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004479Metagenome / Metatranscriptome436Y
F041711Metagenome / Metatranscriptome159N

Sequences

Protein IDFamilyRBSSequence
Ga0307992_10244772F004479AGGAMHNSKILVGNSGDKVFLQGNKVIKEAGHYPEKFKQQMDFLLCTDHPNFINIKPLSETSYEMKRYSTWYDKILIQPLNTSLGQLENLISIIGKFDNIGSDVKTQDYFDKLQLRTGYTYEGTFDATSAWGFVHGDLTVSNILHDKDFLFIDPRGTEEQNYYDYGKLMQSFVMEYESHIYNNHNKKYSNFCKGAEKIMYEWCDEYQLKFFLAVHLLGAVPFFELNERYELAGSFLRKGHELFDELEIKYTK
Ga0307992_10244775F041711N/AFCFTRSKKKVTAHNTDKTIFMQPQQDGVEMKPNNKGYGANDTSHSATSWRPSITGDLRYRNPDKQKNTAPKLKGAPSNSGGILPVDWDMFKRVMMNVKDAGKNYMYIPKVTSFYRNREGK
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