NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307992_1021398

Scaffold Ga0307992_1021398


Overview

Basic Information
Taxon OID3300031601 Open in IMG/M
Scaffold IDGa0307992_1021398 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #133
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2999
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (20.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (25.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F022458Metagenome / Metatranscriptome214Y
F030151Metagenome / Metatranscriptome186Y
F052204Metagenome / Metatranscriptome143Y
F068870Metagenome / Metatranscriptome124Y

Sequences

Protein IDFamilyRBSSequence
Ga0307992_10213983F068870N/AMDSLTSKPSCIKDLKELVSQLTDRDVNIKNHLQSIRSIIADKDIKTDAIKIKKIKQILKN
Ga0307992_10213986F022458N/AMINDWLNQNPDDGFNPNDHGIEEDEIAKLHAMADMKEDQEFWAREQANKFYYDFQSLDIVDSIIAVDTLIKEKVLNISQVNIMLDNMIKVFTIDEEYEKCHICNEIKKGLSNDRI
Ga0307992_10213987F030151GGAMIEFNASNVEELEAEARERAHEVSVNVVQCVIRALTAGVDKVIVGYMANVDLDLSVEKDGFLEALETNLVRCEEAEEYELCKEAIKWIKKLSK
Ga0307992_10213989F052204N/AMDIYTETSTKIDFSKGLEITPTIVFDGVELESKTFSNKTHQIEELLDFITYNENGGCDVY
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