| Basic Information | |
|---|---|
| Taxon OID | 3300031601 Open in IMG/M |
| Scaffold ID | Ga0307992_1004505 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Ellis Fjord, Antarctic Ocean - #133 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7486 |
| Total Scaffold Genes | 28 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 7 (25.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → unclassified viruses → Virus NIOZ-UU157 | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Southern Ocean | |||||||
| Coordinates | Lat. (o) | -68.5958 | Long. (o) | 78.1913 | Alt. (m) | Depth (m) | 60 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F008425 | Metagenome / Metatranscriptome | 333 | Y |
| F032332 | Metagenome | 180 | Y |
| F051263 | Metagenome / Metatranscriptome | 144 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307992_100450511 | F008425 | N/A | VLTEDITYKQFVTHMDKGNKVYMKKPRSWQKIWFWWESKREKWFLNKAYDKREDGRVITDNSVWLTAKQMESHLKFMERRGYKYHIDE |
| Ga0307992_100450514 | F032332 | N/A | MEYNKGFNEDFIRSLLLNLEHSDFNQFMELSYHVLMQSPGEVLKRGDSIENKIESIDGLIKYFESIEVYEKCTNLQKLKSMLFLNTSFDEDDM |
| Ga0307992_10045058 | F051263 | N/A | MNIPNFESFELNEAEKHEFNPNETAERLKRREQQNVVRYRAAQEREDNYSIEYYKYRIAIDKIDLQKLKLMTQIHQLKQKHKK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |