NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307992_1003536

Scaffold Ga0307992_1003536


Overview

Basic Information
Taxon OID3300031601 Open in IMG/M
Scaffold IDGa0307992_1003536 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #133
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8611
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)60
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031354Metagenome / Metatranscriptome182Y
F059653Metagenome / Metatranscriptome133Y
F091296Metagenome / Metatranscriptome107Y

Sequences

Protein IDFamilyRBSSequence
Ga0307992_100353611F031354GGAMKTTFDINDILFKVVNVVSVKTTIDGGVYRNKKPLNSELQDVIILPLNNYVGSEIINDSTFIINCYCKNFTGGTPDITKLRAITNAVVTVIEAYSNTSNYYVFDIVNQILLQDTEQVSMSYSSLRIQCFIEK
Ga0307992_10035368F059653AGGAGMTNLEALQSQTEYSNDNLLEKILLDKGITSGDTYVAANEKNIDLAAASLYFTLAAHPEFRDGKTSIKYNSVQLIAMARAIERKYGVKVATVDGAAIW
Ga0307992_10035369F091296GGAGMVIKRYPHTATISYYGAGTTNSIGIYTPGTLVTVGIVCNIQPNTTRYMVSESGDMIGYNFDIMSPLFTGAGSVPDDAKIFFHNKDHVIKLLYPYQKHVEVKC
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