NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307992_1002407

Scaffold Ga0307992_1002407


Overview

Basic Information
Taxon OID3300031601 Open in IMG/M
Scaffold IDGa0307992_1002407 Open in IMG/M
Source Dataset NameMarine microbial communities from Ellis Fjord, Antarctic Ocean - #133
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10671
Total Scaffold Genes24 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (16.67%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5958Long. (o)78.1913Alt. (m)Depth (m)60
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011397Metagenome / Metatranscriptome291Y
F020177Metagenome / Metatranscriptome225Y
F022996Metagenome212Y

Sequences

Protein IDFamilyRBSSequence
Ga0307992_100240710F022996N/AMETIEKIDIATMKSDIKTMVKKQKFYKNQRHSEKLVGEREMSPSDATYEHAENREMLRAMYAAYGQARGKSFSVVENHYPEATHPLNDHPFPARIDRLLKQYTILVEVEVEVQDI
Ga0307992_100240715F020177N/AMEINLDNTKWDRVRGFVTELRVDARWVLRDIESEKPYGSLRIVSHPDLPPGQLRAIFNYVTSIEVKSNAQKLQATEDYQMELTDLEVYSVDDQIETKNETIEAPYKELEEIFDIKVFQ
Ga0307992_10024075F011397N/AMKDFELLKRTYPVSEFNRNCDGYIYILDNTTTEQRKTWRINAKELQREIKTGEKYIYQVAKEQRAFKIMSMCFENYAIIRKHIFGIDDE
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.