| Basic Information | |
|---|---|
| Taxon OID | 3300031601 Open in IMG/M |
| Scaffold ID | Ga0307992_1001231 Open in IMG/M |
| Source Dataset Name | Marine microbial communities from Ellis Fjord, Antarctic Ocean - #133 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 15307 |
| Total Scaffold Genes | 20 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (15.00%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Southern Ocean | |||||||
| Coordinates | Lat. (o) | -68.5958 | Long. (o) | 78.1913 | Alt. (m) | Depth (m) | 60 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F014036 | Metagenome / Metatranscriptome | 266 | Y |
| F026041 | Metagenome / Metatranscriptome | 199 | Y |
| F102062 | Metagenome / Metatranscriptome | 102 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307992_10012313 | F014036 | N/A | MGSIMQMFGLLFIIFLSFAFHCVVYEDDYVKKWYWKVLLGGGILGLVFAGVMGY |
| Ga0307992_10012314 | F026041 | N/A | MIKIIKEKPIKSSTSVEGILVQVTGGQWYGITRFMAPRNPWMGRAAKATTTGRMDFGAGNETFQKSFTASPDWEELKTMLTDVLNGGDAIIDKLTY |
| Ga0307992_10012319 | F102062 | N/A | MKILIWIKREDAVTGDINKYYTALPLVGFNKHEWVQVEITQNEFTILEDEQ |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |