NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0308007_10256968

Scaffold Ga0308007_10256968


Overview

Basic Information
Taxon OID3300031599 Open in IMG/M
Scaffold IDGa0308007_10256968 Open in IMG/M
Source Dataset NameMarine microbial communities from water near the shore, Antarctic Ocean - #71
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)591
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Archaea → TACK group → Thaumarchaeota → Thaumarchaeota incertae sedis → Candidatus Nitrosopelagicus → unclassified Candidatus Nitrosopelagicus → Candidatus Nitrosopelagicus sp.(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Marine → Saline Lake Microbial Communities From Various Lakes In Antarctica

Source Dataset Sampling Location
Location NameSouthern Ocean
CoordinatesLat. (o)-68.5735Long. (o)77.9231Alt. (m)Depth (m)26
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002602Metagenome / Metatranscriptome544Y
F004614Metagenome431Y

Sequences

Protein IDFamilyRBSSequence
Ga0308007_102569681F004614N/AAQYRTHHEIDIDIDEEFWPMTGILFTIWGGWTSVVHLVDWLTVDAIVWWVEPLTILPFVFLLIMKEQFDSLNPLHWWPMFFGYKIKLPDEDRVKIYPIDGEDLIKKYGGPLQVHIVDYEHIKFRRKKDAVIFALKNF
Ga0308007_102569682F002602N/ADNIKALVVAIDEKDHQIRMLLRQQDNNEVQISEYRQIIKELSKKLENYEKLYGTVFKPARNSLKQK

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