NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307376_10055424

Scaffold Ga0307376_10055424


Overview

Basic Information
Taxon OID3300031578 Open in IMG/M
Scaffold IDGa0307376_10055424 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - TR-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2872
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005129Metagenome / Metatranscriptome411Y
F007892Metagenome / Metatranscriptome343Y
F076593Metagenome / Metatranscriptome118N
F092077Metagenome / Metatranscriptome107N

Sequences

Protein IDFamilyRBSSequence
Ga0307376_100554242F092077N/AMNKDLSPLQRSFDRINELIPHSHDALLRCSLYEMCVELTNKSFAEGINTKY
Ga0307376_100554243F005129N/AMKYEVKIEDRSLSINLTHRSVVDLGIFTVKATTHTFLFEAKDTDWGADINETELEFYVNNKRCKYVGFKELYTQLYGNSFVTWEADLIRQIEEEVAKQIVKEYPGTDVNY
Ga0307376_100554245F076593N/AMTLTEHQKNELDTVADSVAHYIEDHLRETINWQMPDSLVDELHEDQFLDAMGYAYEKVLQLITE
Ga0307376_100554246F007892N/AMGRLIEISPQQDVVNKINAKADFTHNINNTRLERYTVSTKNVFTGKNPSLFLKDTWKVVDDAFNSDQELLGGWLSEDDIYFLDYGLSVSDLKKAMKIAKFNKQLAIYDNVLQKVIPVAD
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.