NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307376_10026539

Scaffold Ga0307376_10026539


Overview

Basic Information
Taxon OID3300031578 Open in IMG/M
Scaffold IDGa0307376_10026539 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - TR-2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4445
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Bacteria incertae sedis → Bacteria candidate phyla → Patescibacteria group → Parcubacteria group → Candidatus Falkowbacteria → Candidatus Falkowbacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002287Metagenome / Metatranscriptome574Y
F027829Metagenome193N
F041161Metagenome / Metatranscriptome160N

Sequences

Protein IDFamilyRBSSequence
Ga0307376_100265392F002287N/AMSQVGKLGYVDSKLGAPTSGQQTTRVLFNTVTPAAATSQLAFFKNFNGLTNGQTNLTQNKLDSMESMVIKTIWLAQYTSGFIASFGGQTQQTLSIIVGNQTVVKNLPIQFNTGTNGQSFDRLHANAGATSNIQGSGFEGQVDLPCEIRLLTDIVIPPQVSFEVRIDGGRPYGTNTFVCALNGYGKIFSAGASF
Ga0307376_100265398F041161AGGMPYKNLMYTLQMMGKQVAESVEFADQFLPRATTPKEIWFILKDNLVYKNDPPGIELLQSFPSLMNDNYWGIPGAGDCDCFTIAALACAAVRGIPARAVIVGNSSQAPTHVYCQYLVDGRWIDFDLVSSDYGTTKPYKYKQTLKLH
Ga0307376_100265399F027829N/AMAFTNRFEADISPKKTRIDAKAFQQYIDIPIGQNPETGKVYTFRAYIAVSKMQKKLNYKPTILVTLTFFKYKLHLQTRDIDALNSAFRKLSSFVDLQESNLKDKLSQEISAYDKWEQEYIDRKKDGIISINR
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