| Basic Information | |
|---|---|
| Taxon OID | 3300031578 Open in IMG/M |
| Scaffold ID | Ga0307376_10013410 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Risofladan, Vaasa, Finland - TR-2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6709 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 3 (20.00%) |
| Novel Protein Genes | 2 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 2 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Finland: Risofladan, Vaasa | |||||||
| Coordinates | Lat. (o) | 63.0472 | Long. (o) | 21.7116 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F020000 | Metagenome / Metatranscriptome | 226 | Y |
| F051534 | Metagenome / Metatranscriptome | 144 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307376_1001341011 | F051534 | N/A | MATHAEIEQRQSVIRGWLESGIAHSSAATMASVRFHISRSVSYDAIRQAQQTIDSSDDGPAESEQDLEPLSILATLQHHFNIAAASGDVPAMAKLVQSMDKARTWRGLKQEKASPLQSPH |
| Ga0307376_100134104 | F020000 | N/A | MAGVASTGVNRYTNIVEHTGATMTSVDDWFAVGSHTSEYAFAADVSSSGNFTLALEANFESSGSWFTIDTSKTINSSGQYVYFYTGKSAPQVRMRIAAISSGTVSLTPHIIAAYHG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |