| Basic Information | |
|---|---|
| Taxon OID | 3300031578 Open in IMG/M |
| Scaffold ID | Ga0307376_10012924 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Risofladan, Vaasa, Finland - TR-2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6848 |
| Total Scaffold Genes | 15 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (13.33%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (14.29%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| Not Available | (Source: ) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Finland: Risofladan, Vaasa | |||||||
| Coordinates | Lat. (o) | 63.0472 | Long. (o) | 21.7116 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005132 | Metagenome / Metatranscriptome | 411 | Y |
| F008384 | Metagenome | 334 | Y |
| F016593 | Metagenome / Metatranscriptome | 246 | Y |
| F020605 | Metagenome / Metatranscriptome | 223 | Y |
| F024348 | Metagenome / Metatranscriptome | 206 | Y |
| F056899 | Metagenome / Metatranscriptome | 137 | N |
| F063073 | Metagenome | 130 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307376_100129241 | F020605 | N/A | NPSHGHNVVKLGYLTIEPAVYDEDGNETKAAVVSDVYAVDVWWFGEPLASWDAFIVWPTPLGIHNFGSSSSRDEYAKTYCELHPDSVYCNPTEPEEL |
| Ga0307376_1001292412 | F056899 | N/A | MSRNTFVKASISGDYGQDIVMKYLKGKGYEVEEAPKKLFYDWDVKAIKGNRVVTIEVKYDSKAYMWAARRGTPEHPNLYIEFRSTTRDCDSGILKSKADFYFYILKTGKKDIAFVFDRVQLLQHLQMANYRVVGNSATGDDNAEGWIPPLHELLVSRYGYKATIDLTEYA |
| Ga0307376_1001292414 | F063073 | N/A | MNSTAEEKSSTPIHSLILDRRKAFAELIRAYLRFNVASAKKVEVMPNGSLSINDTIFKVDISDYTGIEGGFGYIFFNPSSGRLVIEKDNVRKIYKVEVDLLD |
| Ga0307376_100129242 | F016593 | N/A | MKRLKAGVVNTLSFVKLSTFTVNSFDVTLDKVVGTGSLTITNLTDLNNLDSCKDFIQLNVDLINNELEGGEYELTITNSGESYKYLTEVQDYTTTQTGTGIYGSTVRFTDL |
| Ga0307376_100129244 | F005132 | N/A | MVDVIFIDDNYLYQNFPLPKRMDRGALLALIQLEQYTSIQDLLGTCLYEDIEAKVLAETLNVAEQGLFKLVKYTLAMYSAKAAISILRTATATTKAEEQKQDQYILDTISTTVDSKLSYINKRITNYILDNAAIKAIATADGCDNDLFDEEDTYQGDVFYPQDGIIHKSCEDGGVSYNP |
| Ga0307376_100129248 | F008384 | AGTAG | MPRYDKSLIEREAILSVEQGSLTNELGIFILKRCKEIAASAFVTDGNNELKQALIDAAVMRTCEKFLHYYTEGKSAANLVISIIYSTMTNKIVSLNHSDVYGQNIKGYLTYIEDGEAVTKLMRYIKDDYLSEKL |
| Ga0307376_100129249 | F024348 | N/A | LTPRRESDYAHPIKMLFEEYYEDLTDAEANLILDIYRVIDVLVYNHDPVTLVRLGFELGINTQELSDYLPIIITILNKVEEQYAEV |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |