NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307489_10037617

Scaffold Ga0307489_10037617


Overview

Basic Information
Taxon OID3300031569 Open in IMG/M
Scaffold IDGa0307489_10037617 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 1.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2662
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F020000Metagenome / Metatranscriptome226Y
F070056Metagenome / Metatranscriptome123N

Sequences

Protein IDFamilyRBSSequence
Ga0307489_100376172F070056GGAGMGKSLEKVVKPDGSEVWELVELREKQPEPEACKPVRKRKPSKPAEETPTTTFEF
Ga0307489_100376175F020000N/AMPAVATTVVDRYTNVVEHTGATMSAVDDWFQVTGHTTEYSFAAAVTSEANFTLALEANFNGNGGWFTIDTSKTINSSGQYVYFYTGKPASKIRMRIASISSGTVSLTPHIVAAYHG

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