NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307489_10016983

Scaffold Ga0307489_10016983


Overview

Basic Information
Taxon OID3300031569 Open in IMG/M
Scaffold IDGa0307489_10016983 Open in IMG/M
Source Dataset NameSea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 1.2
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4182
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (10.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)71.3731Long. (o)-156.5049Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F041785Metagenome / Metatranscriptome159N
F070154Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0307489_100169831F041785N/ATDEQVKQIQDLMETNGYSELWEARHDIEMEGIIDDLYNPDLFHVSRGLDNSGLWFSLKDDKDNEVLRFEPSDMEDIYEMLGDSADDIPYEGYLAIPGEGKNENIDNILVVFDENKGGICEYEMFESDELPTAKDFCVQHGDIGTPDGDWDFISKVFYKGKDLEVYDHLDNRGKAATVEIYRKDGSTIN
Ga0307489_1001698314F070154N/AMIKYSTRLVIILKNVVIKIPVSKKGYLQGLNEKKIWDKYNNINSWEFNTLAELKWMWMGVVCQKRYNTVSSIQPRVVNRIKSLIHEFDFDNCDLHNPENWGIDGNKYILLDYGVNEHIASLYN
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