| Basic Information | |
|---|---|
| Taxon OID | 3300031569 Open in IMG/M |
| Scaffold ID | Ga0307489_10004421 Open in IMG/M |
| Source Dataset Name | Sea-ice brine microbial communities from Beaufort Sea near Barrow, Alaska, United States - SB 1.2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 9235 |
| Total Scaffold Genes | 12 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (16.67%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Coastal → Unclassified → Sackhole Brine → Extreme Environments Viral Communities From Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Alaska | |||||||
| Coordinates | Lat. (o) | 71.3731 | Long. (o) | -156.5049 | Alt. (m) | Depth (m) | 0 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F020903 | Metagenome / Metatranscriptome | 221 | N |
| F029278 | Metagenome / Metatranscriptome | 189 | N |
| F043411 | Metagenome / Metatranscriptome | 156 | N |
| F080238 | Metagenome / Metatranscriptome | 115 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307489_1000442110 | F080238 | N/A | MKDKETEFEKMLKNLESIPVPERTCNIDDNNCESCSG |
| Ga0307489_100044213 | F043411 | N/A | MNWITKKMFKEKMLKRRLTYNNKRVYIKSLDSKLAIVSHTEEGNYKQFKVNIEDLVDFK |
| Ga0307489_100044217 | F029278 | N/A | MEITIPTKWSDVTIGNYINLRPVLNSDLQPIERVVNILAVLTGQKRDVIKNISLDQFKSIKKKMSFLETELPNKLKDKRFKIGGQWYEFKVDARKLLFGEYINSMEILQNAKDDQEAIFNNLHHILTTICRPVKKTIFGWKHIKVDGEILRKTADNFLNNMPITIAYPIGVFFYSHSEDLTKAIKTSLMDQAKKMTREAKKELDLLRDGDGGVH |
| Ga0307489_100044218 | F020903 | N/A | MAEQLDIFGFDTDQLEEVKVDNPTTLSEVFNNIAADMVYCLKQSVTKEGLVYKGKLHDSIRMPVKMFGFKMIATLFLADYYDYLNKGVKGIGGTRKSGDKKGQGWVIKAPNSPYQFKKGPSVSHIKAWSKSKGLNEYAVRSSIAHTGIRPRFFFDNCMQQTFYGEAFNRFKTDIRIVSGERIAKGIKEILKK |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |