NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307378_10276506

Scaffold Ga0307378_10276506


Overview

Basic Information
Taxon OID3300031566 Open in IMG/M
Scaffold IDGa0307378_10276506 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-1
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1601
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (16.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F033413Metagenome / Metatranscriptome177Y
F058109Metagenome135Y

Sequences

Protein IDFamilyRBSSequence
Ga0307378_102765063F058109AGCAGMIETNFFILNGEQYQQFYTEASEYGMNIDHYLMEFCDIEGPMVEVGNE
Ga0307378_102765064F033413N/AMTVHYANLFSKSINLTEDFILDFTRTFTSNTFDKYTRNDGKVYIKHGVDRDTKVDVFSVEAMIYEYKGCWVGNQKNFGSFHNFADAISCARNVQLPQDSISEDAALALMSN

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