NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0318571_10045316

Scaffold Ga0318571_10045316


Overview

Basic Information
Taxon OID3300031549 Open in IMG/M
Scaffold IDGa0318571_10045316 Open in IMG/M
Source Dataset NameTropical soil microbial communities from Luquillo Experimental Forest, Puerto Rico - GRE.SIPMG.088b5f24
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1290
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Lab Enrichment Of Tropical Soil Microbial Communities From Luquillo Experimental Forest, Puerto Rico

Source Dataset Sampling Location
Location NamePuerto Rico: Rio Grande
CoordinatesLat. (o)18.321Long. (o)-65.8172Alt. (m)Depth (m)0
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003143Metagenome / Metatranscriptome505Y
F007821Metagenome / Metatranscriptome344Y

Sequences

Protein IDFamilyRBSSequence
Ga0318571_100453161F007821N/ASRLVKAAVIAAILAVVIDSLPDIKRYLEIRDMLGPRAERM
Ga0318571_100453162F003143GGAGVSAVEAVIGFAVGYWIGTRQGRQGLQNALESAQAIWAHPETRRMLAEGISAIETVAGPAMERIRARSRRGTLISSVVDELIERRQARHAAA

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