NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307380_10521800

Scaffold Ga0307380_10521800


Overview

Basic Information
Taxon OID3300031539 Open in IMG/M
Scaffold IDGa0307380_10521800 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1040
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F004790Metagenome / Metatranscriptome423Y
F016960Metagenome / Metatranscriptome243Y

Sequences

Protein IDFamilyRBSSequence
Ga0307380_105218001F016960N/ALLVCSDWRYVNELRVCQDILWEKGWRVRTIYVATAGIGPANDEELDSIAEIRASHLFDQEYIFRPNSRNQIMSEGRNLAKSWRL
Ga0307380_105218002F004790N/AMETLNRETIQWGLRIGIAPDRMAFLAACPKFTVCHGSRKSERNVKDNPNHHLQRLGSCWWFRLRRRGKDIVENIGQDLTIARQRRDEMLAAFDAGKPIPYLSTK

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