NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307380_10175422

Scaffold Ga0307380_10175422


Overview

Basic Information
Taxon OID3300031539 Open in IMG/M
Scaffold IDGa0307380_10175422 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2098
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (88.89%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F010878Metagenome / Metatranscriptome298Y
F015793Metagenome / Metatranscriptome252Y
F032867Metagenome / Metatranscriptome179Y
F054777Metagenome / Metatranscriptome139N
F102114Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0307380_101754221F015793N/AIKTFEDRYNNNKKFHHVNLMGLKFRVANNKRSKRKSNKVFYSTSRGIVFNLLPSRYLCLITK
Ga0307380_101754224F054777AGGAGMTNKINDETLQRLYEDVVADDEAGLIDDDVNEIAHLYNLHADDDRDEILQIIAENEFYEQFT
Ga0307380_101754225F032867AGGAGMDDMTQMIDDLIDNHYRVQHLIGTEADESEYLADIEEEDDE
Ga0307380_101754226F102114AGGAGGMSDYIVVIKVEICECKDKQEAINFVADNIGLSEFNLEIDIEEEDDDI
Ga0307380_101754228F010878AGGAGMKITAWNIGIVWEDGTEENIGDIPDWVANRVDEFLNELEEVDDEC
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