NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307380_10122885

Scaffold Ga0307380_10122885


Overview

Basic Information
Taxon OID3300031539 Open in IMG/M
Scaffold IDGa0307380_10122885 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2628
Total Scaffold Genes6 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001326Metagenome / Metatranscriptome721Y
F003964Metagenome459Y
F009743Metagenome / Metatranscriptome313N

Sequences

Protein IDFamilyRBSSequence
Ga0307380_101228852F003964GGAVAGVSAKVEVVGLKDALKTLNKLDKSLRREITKDYKKIVQPVIDDANKLVPTSAPLSGMTRNWQTRSGFLMLPWIPGYKQKIIAKINTRAIREYGGRTTNVGTFGIQWKGATGSMFDTSKAGALGVALSARYGNPSRVMWKAYEQRQNDVMSEMERLVKRVMDEANREIA
Ga0307380_101228853F009743AGGAGMKIKLQLKRTPDSAPEYYYTNLFVTTEWERLERRNAQQLTTQPLFSDYCCWMHTILKMKGEQVGDNWRDWVKANPDIEVIPVVDESDPNPTDAAPTVAN
Ga0307380_101228856F001326GGAGMATYTVTNKYLIDDFAVLQLLTPSEIAVGQSITVAGVDATFNGTYTVRALPQYLYLGVDTEGDLLYDYQIPIADQVLYARVADDVERTAATGTITYAPVCTWVTAADVMAYLGITIANPSDDYTLLTQSVSAGNQFCYRRRQESGYIDSLTTSPGGDATLGTLMYCAALWRSRGSIENTYATFDGMGTATQQSLTPIVKQLLGIPRPAVA
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