NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307380_10101640

Scaffold Ga0307380_10101640


Overview

Basic Information
Taxon OID3300031539 Open in IMG/M
Scaffold IDGa0307380_10101640 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2962
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049009Metagenome / Metatranscriptome147Y
F095530Metagenome / Metatranscriptome105Y

Sequences

Protein IDFamilyRBSSequence
Ga0307380_101016403F049009GAGGMAFDVSTLANFNNETAGELFVKAIMEGSTIEYVTVKEGIKYKEPINLFEVDLDIVDGRGCVTSLAGTASYAQRDIEVCQRSSHDGLCLRDLDTKYLGVMQPGGSYNESFTLVQEYSDQIVKGFQKANDQFIWGATTGAGDCVNGLKTIISGSTSGVVVPVSITGSAPSSTNIGDQIDVMLENLSADVQDREDLTVFMSITNFRKYITWLRNENNYHYDPAAVENRSNFMAMRHPFTPNVTIVGTIGLQGSNRLVMGPAKHIVVGTDLLSDVSNFQLWYDINDDKLKHRVVTKMGMNIAYPEFWVSNDQA
Ga0307380_101016404F095530AGGAGMSSCDITSGFTLGCRDNTGGLKNIYILSGSISSTSGTTGLLSAISGSGT
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