NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0307380_10069398

Scaffold Ga0307380_10069398


Overview

Basic Information
Taxon OID3300031539 Open in IMG/M
Scaffold IDGa0307380_10069398 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3759
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000716Metagenome / Metatranscriptome923Y
F028489Metagenome / Metatranscriptome191Y

Sequences

Protein IDFamilyRBSSequence
Ga0307380_100693985F028489N/AMKMIGKELKIKHTTSYKTFSVLPMNRSIDSKHVQKMIASLRIQGCLRVVICCRTNIFEGEWKTYIVDGQHMATALEREGQPIPYIEIDIESEEDLIKKMAYLNNSSKSWDMMNFINAWKMIRPDYMKLFKWKNMYDIEVTMLAIIGVNNAGVRYSTGMLKTGNFQITNPRAEDMCKAFNDIFLKIGKSDRAVKFQFLSAFMQAYTPKYDHSKTMVAIEKHIKTVKLMAIGDETGTFIRKQIFKLPK
Ga0307380_100693988F000716N/AKNMIMKNLEIEIKNYQLNSDKTYMKYELDKYSEYQNYLYKRALYGLNALNEKELITICSKKKQRILNVYKKAQTILNVLKQKISINYTNSLFLNLFPNSNLTTSLIEHTEIDEKFKNCLTFKDLNINKTDIITIFIEEGVLPKNFLSLQEAPVNLPMLKNQSV
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.