NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307380_10058738

Scaffold Ga0307380_10058738


Overview

Basic Information
Taxon OID3300031539 Open in IMG/M
Scaffold IDGa0307380_10058738 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4174
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012872Metagenome / Metatranscriptome276Y
F013704Metagenome / Metatranscriptome269Y
F014505Metagenome / Metatranscriptome262Y
F016957Metagenome / Metatranscriptome243N

Sequences

Protein IDFamilyRBSSequence
Ga0307380_100587383F012872GAGGLYYMEKEAELFKALDHLSKELSEQEQMNKEQLWEVFHICADTAAVYRHITDYFNTLDRLILDARIKNGNLKQEVYDLKKENARLQESLERYMDEF
Ga0307380_100587384F013704GAGMNFKRKMLNGQRFEINGMEFICIETHAYFQTRLDGEESDIDVGSSYYIVRNTSTGTLHRIPFQRIIEKENDIKWKN
Ga0307380_100587387F014505N/AVGNIENFYRENFKRLTGFIKQYTDGSYEIASDIVQMVFVRLLEMEGEGRTNFYEEDSLNFFYVYRSCINTALKYQRTKKRIDKISLEDMTYDQLEFEDYPEQKVAMEKLINYMESEIEDFHWYDAKMMRIYMNGTSMNKIHRESDIGLTSIKNTIKNGKARIYEKVKEDYQDFQNGDFDK
Ga0307380_100587388F016957GAGMQLRNYLKDKRKLTESRTKVCVEVGKTGEALFKEITGALKSDLEDDKKHIDFYWGEKLVDVKGLKKMHLSGYILLEFINVWGGDGWCSKKSKAEYIAFQFPDAFYVFRKKHLRVRAIELCEPFYNDKVERRNYIPYDDALHKWVGRWNAQDVFTYVKFEDVEDLVFEVLPYTIKE
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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