| Basic Information | |
|---|---|
| Taxon OID | 3300031539 Open in IMG/M |
| Scaffold ID | Ga0307380_10051983 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Risofladan, Vaasa, Finland - UN-3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 4504 |
| Total Scaffold Genes | 11 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 5 (45.45%) |
| Novel Protein Genes | 5 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
| Associated Families | 5 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → PVC group → Verrucomicrobia → Verrucomicrobiae → Verrucomicrobiales → Verrucomicrobiaceae → unclassified Verrucomicrobiaceae → Verrucomicrobiaceae bacterium | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Finland: Risofladan, Vaasa | |||||||
| Coordinates | Lat. (o) | 63.0472 | Long. (o) | 21.7116 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F002333 | Metagenome | 569 | Y |
| F002738 | Metagenome / Metatranscriptome | 533 | Y |
| F013517 | Metagenome / Metatranscriptome | 270 | Y |
| F020161 | Metagenome / Metatranscriptome | 225 | Y |
| F043890 | Metagenome / Metatranscriptome | 155 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307380_1005198310 | F013517 | N/A | MFESLLSAVLPVMKDLLWAAAGMLLTYMLNKFQSQFN |
| Ga0307380_1005198311 | F020161 | N/A | MTQLTQAKLKELNVLQLYEHYGALERSLPLLTADTQELAKAELETCASLRSEKIDRIYYAMAAHEDAIERIKKEADLITNAKRHHESQLKSLKGLLNWLRRSLPFDTNKITGRNYQFTLVKKRDLTVEISSDPEFWHTEERATYCIEEEVTTTKRVV |
| Ga0307380_100519836 | F002333 | N/A | MSTLTQLNAAQASIYSRTNIRRAFQDFDDTDLAAINLRDDHCIVVYRDGAERVLPRDTIKSAFSSYTHRLKDFFSYLGPNYRGPSVWHNNAYILFKGWTYTHALGHLSSNAQLQSHWADKFIHISDPAKVTALLQSDQTDLGHLVAPDGLRLPDRPLDMDGELDDGTEQDPVFGEPSCSCGSFQRQLNNLSSFQEEIQGFKPWCIHLTWFNKYRELLCKRTEVRNTSPSGAPDKCVAWWYAPPADHASDGRFVLLHTKSGAQAPLSHWRTYKPNETFTQKDAWTLFFNMMEAGYAPFPGTSLPQLKNAFKK |
| Ga0307380_100519838 | F043890 | GAGG | MQNNSSNPIAKLNSIEKLQIEYIDEPDGTGTIRIEWDENDSDLQWWTNLGPEGQEAFIIDSLYAALECYVD |
| Ga0307380_100519839 | F002738 | GAG | MSIDTYGLPSEQYEEFFEDNVTFAAKLYVKACQILRDNGAGAIDFKTTLDLYQEAIYGTNDDCRKYQKVNNPEAIKDNDLFSLTPSREELMQEIQAVNVKVEALVDYIARLVETTTDGLNGLVEVMDKEG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |