NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307380_10048122

Scaffold Ga0307380_10048122


Overview

Basic Information
Taxon OID3300031539 Open in IMG/M
Scaffold IDGa0307380_10048122 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4728
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (10.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families4

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006840Metagenome / Metatranscriptome363Y
F032628Metagenome / Metatranscriptome179Y
F096710Metagenome104Y
F100847Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0307380_100481221F032628N/AMALTAVYVGNYIRKEGEQKGKTFHIYTIKGTVAELKEYASTPQFKKYPRKSATGELQMHTMYMDAFRDELPLYKKQDGNFTLDQSETRKDLSRLELIEQTGNSVLAARFADKLADKVFGAVKVSSSKASAFIDEPVASGGDDAELNEDV
Ga0307380_100481222F100847N/AMANYVNIEGNQVIDLTPDYNRPLALVDLTVLNKLTELLPKSDFSSIRHNFREQIMNTSNLEQLVQASEDFIAFHRSVNLIREVLSMDVNQIQEVKEQVRVVGRIELDEL
Ga0307380_100481223F096710N/AMKNQLPTQSALVSIHPCKSHDFLYVIKKVNTDLWLPRIPKAVVKDSIQSSGLYEIIYRLYTNEAGYESIYITKAKKIKTS
Ga0307380_100481226F006840N/AMKPFQKLRGRAILLDVPKRKESTIQLSAKDEDLIMAEAVKMWNKLTVYAIGDKVEEVAVGDQVYIRTSSLNMEVVERIEIDGEVKLVLNEGDVVIIW
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