NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0307380_10020381

Scaffold Ga0307380_10020381


Overview

Basic Information
Taxon OID3300031539 Open in IMG/M
Scaffold IDGa0307380_10020381 Open in IMG/M
Source Dataset NameSoil microbial communities from Risofladan, Vaasa, Finland - UN-3
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7956
Total Scaffold Genes17 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (52.94%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C440(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland

Source Dataset Sampling Location
Location NameFinland: Risofladan, Vaasa
CoordinatesLat. (o)63.0472Long. (o)21.7116Alt. (m)Depth (m)1
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000368Metagenome / Metatranscriptome1223Y
F010680Metagenome / Metatranscriptome300Y
F045716Metagenome / Metatranscriptome152N

Sequences

Protein IDFamilyRBSSequence
Ga0307380_1002038111F045716AGGAGMSDNSPIQINFKTKKDGMLINLRAQDGAELDLLLDQLTQRLAALVDLEKTVEGMAVVKDAFPNSVPIQGTTAVPRPTQAAPAAGAPDCSCGSGPMRFVPAGIAKATGRPYKAFYACPKPQGQACQNKLTV
Ga0307380_1002038114F000368AGGMEQFKQVSLTWFRAAGAAAIALYLAGETNLKVLGTAALAGLLGPALKWLDPSAKEFGRGA
Ga0307380_100203815F010680N/AMLTMCSLPKEQRDYESEWVFKQVIVKLSQEEVRVCTTLAVERWLTKFGSIDRPNYAAGKKFGKLEPEINANIRANVAEWAVAREYNLSWSVPWYPNELHSKRKNIPDVGEFEVRTVRTQSAIPFWKKDAGRTIFGVKILDEEYYSIVEIFGSFKADNFMIDEYADASIDGWRVPIELITGGIDG
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