| Basic Information | |
|---|---|
| Taxon OID | 3300031539 Open in IMG/M |
| Scaffold ID | Ga0307380_10012061 Open in IMG/M |
| Source Dataset Name | Soil microbial communities from Risofladan, Vaasa, Finland - UN-3 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10777 |
| Total Scaffold Genes | 17 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (76.47%) |
| Novel Protein Genes | 7 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 5 (71.43%) |
| Associated Families | 7 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Soil → Clay → Unclassified → Soil → Soil Microbial Communities From Risofladan, Vaasa, Finland |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Finland: Risofladan, Vaasa | |||||||
| Coordinates | Lat. (o) | 63.0472 | Long. (o) | 21.7116 | Alt. (m) | Depth (m) | 1 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F000722 | Metagenome / Metatranscriptome | 922 | Y |
| F001326 | Metagenome / Metatranscriptome | 721 | Y |
| F002302 | Metagenome | 573 | Y |
| F014971 | Metagenome | 258 | Y |
| F023058 | Metagenome | 211 | N |
| F027510 | Metagenome | 194 | N |
| F041766 | Metagenome | 159 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0307380_100120611 | F000722 | GGA | VTEQPYPETGITEETRRMYPDNYSDKYDKVFKEFVDEIMKPVRPIDRLEDHSILLDELTIMYDAHMTIGGEQNRFNASVLRAAINLIISCTK |
| Ga0307380_1001206113 | F002302 | AGCAG | MAYTDLLNEAIDDLTASLTAVSGLRVINDATKIVPNCVFIEPPSFTTIAGNGNVIRMDFPVRVIGSGPAGLPVLQKILSIVAAVLASPIIVMAGRPSSLEIGGALYPSYDLDCAIQAQTS |
| Ga0307380_1001206114 | F001326 | AGGCGG | MATYTVTQKYLIDNYAVVQLLTPAEIELGASVVVADVDATFNGTYLVRALPQFLYIGVDTEGDLLYDVNVPIANQVLYAKTADDVARVAATGTLSLTQVCSWVTAADVMTYLGVTITDPSDDYTLLTQATSAGNQFCYRRRQEAGYVDSLTTSPGGDATLGTLMYCAALWRTRGSIESTYATFDQMGSAPQQSLTPVVKQLLGIPRPAVA |
| Ga0307380_100120613 | F041766 | AGGAG | MTEPKVFIYEVGRCNLDNGQEILVQIFRHEDTHTIIRAQIAFRTLAGDSWGVPTELDFQK |
| Ga0307380_100120615 | F027510 | N/A | MTVNNLPKFLILLVGLLCLTALMIADKINMESGVPMLTMIIGYSIGNGVNARQGTESSNVFGAKTPK |
| Ga0307380_100120616 | F014971 | AGG | MTHAEAVAMYPHDEVFIQVDGVVRPMTPAEYEEFIQRNMIPNPYG |
| Ga0307380_100120618 | F023058 | N/A | MPGVAVIGSGNYDLEIDTGYDWDAFTLDDDLKGELNNTEYVLDGTSQFATVMDGTIALTARRGRENTGDQFTYGTMSFTLNDTYADGVFNPFDTTSPYYDPDNNQPGLAPLREVRFSRYNSLNVKELLWVGYIINYDYTFTLGGLDTVSVNCADFSYQLGQTFLAEWNVSQELSSVRFDNLLDLPEVAYTGTRDIETGTVTLGGSAAYTVDNGTSVAAYADKINEAEQGRIFVNREGTITFQKRIGTTLGTPAAEFHDNGTNIGYSAIDISFMADTVVNRASVQHAGATSPEVAEDLTSQAAYLIQTRSITDSLVHDDTAALALANYLISANPEPRFNFLGTEFPGTLAADQDTLALLDIGDLINIQKSITTSAGPTEFAQNLTIEGLEHRLTLSAGHAVTYFTSSTTIVFELVLDDLTYGTLDEENVLG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |